Detailed information of SNP:
|
SNP ID:
sf0431259538(Gbrowse)
Chromosome: chr04 Position: 31259538 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1313 | 67.78% | 32.22% |
| All Indica | 719 | 78.16% | 21.84% |
| All Japonica | 476 | 57.35% | 42.65% |
| Aus | 66 | 42.42% | 57.58% |
| Indica I | 332 | 76.81% | 23.19% |
| Indica II | 204 | 87.75% | 12.25% |
| Indica Intermediate | 183 | 69.95% | 30.05% |
| Temperate Japonica | 321 | 76.32% | 23.68% |
| Tropical Japonica | 92 | 9.78% | 90.22% |
| Japonica Intermediate | 63 | 30.16% | 69.84% |
| Group VI/Aromatic | 14 | 57.14% | 42.86% |
| Intermediate | 38 | 50.00% | 50.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0431259538 | C->A | INTERGENIC | None |