Detailed information of SNP:
|
SNP ID:
sf0431267774(Gbrowse)
Chromosome: chr04 Position: 31267774 |
Major allele:
G
Minor allele: T Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1413 | 74.81% | 25.19% |
| All Indica | 796 | 88.44% | 11.56% |
| All Japonica | 496 | 57.46% | 42.54% |
| Aus | 67 | 53.73% | 46.27% |
| Indica I | 374 | 87.17% | 12.83% |
| Indica II | 212 | 94.81% | 5.19% |
| Indica Intermediate | 210 | 84.29% | 15.71% |
| Temperate Japonica | 334 | 75.75% | 24.25% |
| Tropical Japonica | 94 | 13.83% | 86.17% |
| Japonica Intermediate | 68 | 27.94% | 72.06% |
| Group VI/Aromatic | 14 | 57.14% | 42.86% |
| Intermediate | 40 | 60.00% | 40.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0431267774 | G->T | INTERGENIC | None |