Detailed information of SNP:
|
SNP ID:
sf0431267949(Gbrowse)
Chromosome: chr04 Position: 31267949 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1419 | 83.44% | 16.56% |
| All Indica | 799 | 90.36% | 9.64% |
| All Japonica | 497 | 72.84% | 27.16% |
| Aus | 67 | 83.58% | 16.42% |
| Indica I | 375 | 89.33% | 10.67% |
| Indica II | 213 | 97.65% | 2.35% |
| Indica Intermediate | 211 | 84.83% | 15.17% |
| Temperate Japonica | 335 | 82.69% | 17.31% |
| Tropical Japonica | 94 | 64.89% | 35.11% |
| Japonica Intermediate | 68 | 35.29% | 64.71% |
| Group VI/Aromatic | 14 | 57.14% | 42.86% |
| Intermediate | 42 | 85.71% | 14.29% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0431267949 | G->A | INTERGENIC | None |