Detailed information of SNP:
|
SNP ID:
sf0431272761(Gbrowse)
Chromosome: chr04 Position: 31272761 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1416 | 81.43% | 18.57% |
| All Indica | 799 | 91.61% | 8.39% |
| All Japonica | 495 | 64.44% | 35.56% |
| Aus | 67 | 77.61% | 22.39% |
| Indica I | 375 | 91.47% | 8.53% |
| Indica II | 213 | 92.49% | 7.51% |
| Indica Intermediate | 211 | 91.00% | 9.00% |
| Temperate Japonica | 333 | 61.26% | 38.74% |
| Tropical Japonica | 94 | 64.89% | 35.11% |
| Japonica Intermediate | 68 | 79.41% | 20.59% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 87.80% | 12.20% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0431272761 | G->A | INTERGENIC | None |