Detailed information of SNP:
|
SNP ID:
sf0431286761(Gbrowse)
Chromosome: chr04 Position: 31286761 |
Major allele:
C
Minor allele: G Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1416 | 94.35% | 5.65% |
| All Indica | 797 | 98.75% | 1.25% |
| All Japonica | 496 | 90.12% | 9.88% |
| Aus | 67 | 74.63% | 25.37% |
| Indica I | 374 | 98.93% | 1.07% |
| Indica II | 213 | 97.65% | 2.35% |
| Indica Intermediate | 210 | 99.52% | 0.48% |
| Temperate Japonica | 335 | 94.93% | 5.07% |
| Tropical Japonica | 93 | 68.82% | 31.18% |
| Japonica Intermediate | 68 | 95.59% | 4.41% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 90.48% | 9.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0431286761 | C->G | INTERGENIC | None |