Detailed information of SNP:
|
SNP ID:
sf0431287803(Gbrowse)
Chromosome: chr04 Position: 31287803 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1408 | 88.99% | 11.01% |
| All Indica | 798 | 87.09% | 12.91% |
| All Japonica | 492 | 90.85% | 9.15% |
| Aus | 64 | 98.44% | 1.56% |
| Indica I | 374 | 90.11% | 9.89% |
| Indica II | 213 | 85.92% | 14.08% |
| Indica Intermediate | 211 | 82.94% | 17.06% |
| Temperate Japonica | 330 | 98.18% | 1.82% |
| Tropical Japonica | 94 | 63.83% | 36.17% |
| Japonica Intermediate | 68 | 92.65% | 7.35% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 85.00% | 15.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0431287803 | A->G | INTERGENIC | None |