Detailed information of SNP:
|
SNP ID:
sf0431288116(Gbrowse)
Chromosome: chr04 Position: 31288116 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1414 | 82.46% | 17.54% |
| All Indica | 797 | 81.68% | 18.32% |
| All Japonica | 497 | 86.52% | 13.48% |
| Aus | 65 | 67.69% | 32.31% |
| Indica I | 374 | 88.24% | 11.76% |
| Indica II | 213 | 77.93% | 22.07% |
| Indica Intermediate | 210 | 73.81% | 26.19% |
| Temperate Japonica | 335 | 92.84% | 7.16% |
| Tropical Japonica | 94 | 59.57% | 40.43% |
| Japonica Intermediate | 68 | 92.65% | 7.35% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 65.85% | 34.15% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0431288116 | A->G | INTERGENIC | None |