Detailed information of SNP:
|
SNP ID:
sf0431288349(Gbrowse)
Chromosome: chr04 Position: 31288349 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1415 | 90.25% | 9.75% |
| All Indica | 798 | 94.36% | 5.64% |
| All Japonica | 495 | 86.26% | 13.74% |
| Aus | 66 | 74.24% | 25.76% |
| Indica I | 374 | 96.52% | 3.48% |
| Indica II | 213 | 92.96% | 7.04% |
| Indica Intermediate | 211 | 91.94% | 8.06% |
| Temperate Japonica | 333 | 93.69% | 6.31% |
| Tropical Japonica | 94 | 57.45% | 42.55% |
| Japonica Intermediate | 68 | 89.71% | 10.29% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 80.95% | 19.05% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0431288349 | C->T | INTERGENIC | None |