Detailed information of SNP:
|
SNP ID:
sf0431288764(Gbrowse)
Chromosome: chr04 Position: 31288764 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1412 | 67.63% | 32.37% |
| All Indica | 795 | 55.35% | 44.65% |
| All Japonica | 496 | 85.48% | 14.52% |
| Aus | 67 | 73.13% | 26.87% |
| Indica I | 373 | 66.76% | 33.24% |
| Indica II | 211 | 41.23% | 58.77% |
| Indica Intermediate | 211 | 49.29% | 50.71% |
| Temperate Japonica | 334 | 94.01% | 5.99% |
| Tropical Japonica | 94 | 51.06% | 48.94% |
| Japonica Intermediate | 68 | 91.18% | 8.82% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 70.00% | 30.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0431288764 | A->G | INTERGENIC | None |