Detailed information of SNP:
|
SNP ID:
sf0431313325(Gbrowse)
Chromosome: chr04 Position: 31313325 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1416 | 68.43% | 31.57% |
| All Indica | 796 | 50.75% | 49.25% |
| All Japonica | 497 | 93.56% | 6.44% |
| Aus | 67 | 80.60% | 19.40% |
| Indica I | 374 | 39.30% | 60.70% |
| Indica II | 213 | 53.99% | 46.01% |
| Indica Intermediate | 209 | 67.94% | 32.06% |
| Temperate Japonica | 335 | 97.91% | 2.09% |
| Tropical Japonica | 94 | 75.53% | 24.47% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 76.19% | 23.81% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0431313325 | C->A | LOC_Os04g52890(LOC_Os04g52890.2) | INTRON |
| sf0431313325 | C->A | LOC_Os04g52890(LOC_Os04g52890.1) | INTRON |