Detailed information of SNP:
|
SNP ID:
sf0431331636(Gbrowse)
Chromosome: chr04 Position: 31331636 |
Major allele:
A
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1395 | 53.26% | 46.74% |
| All Indica | 779 | 74.45% | 25.55% |
| All Japonica | 494 | 23.68% | 76.32% |
| Aus | 66 | 39.39% | 60.61% |
| Indica I | 372 | 78.49% | 21.51% |
| Indica II | 196 | 70.41% | 29.59% |
| Indica Intermediate | 211 | 71.09% | 28.91% |
| Temperate Japonica | 335 | 10.45% | 89.55% |
| Tropical Japonica | 92 | 81.52% | 18.48% |
| Japonica Intermediate | 67 | 10.45% | 89.55% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 45.24% | 54.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0431331636 | C->A | INTERGENIC | None |