Detailed information of SNP:
|
SNP ID:
sf0431345854(Gbrowse)
Chromosome: chr04 Position: 31345854 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1409 | 93.40% | 6.60% |
| All Indica | 799 | 94.87% | 5.13% |
| All Japonica | 487 | 89.73% | 10.27% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 375 | 97.07% | 2.93% |
| Indica II | 213 | 93.90% | 6.10% |
| Indica Intermediate | 211 | 91.94% | 8.06% |
| Temperate Japonica | 332 | 96.08% | 3.92% |
| Tropical Japonica | 88 | 61.36% | 38.64% |
| Japonica Intermediate | 67 | 95.52% | 4.48% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0431345854 | G->A | INTERGENIC | None |