Detailed information of SNP:
|
SNP ID:
sf0431376420(Gbrowse)
Chromosome: chr04 Position: 31376420 |
Major allele:
T
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1393 | 79.97% | 20.03% |
| All Indica | 796 | 95.10% | 4.90% |
| All Japonica | 492 | 52.64% | 47.36% |
| Aus | 51 | 100.00% | 0.00% |
| Indica I | 372 | 91.13% | 8.87% |
| Indica II | 213 | 97.65% | 2.35% |
| Indica Intermediate | 211 | 99.53% | 0.47% |
| Temperate Japonica | 330 | 33.94% | 66.06% |
| Tropical Japonica | 94 | 95.74% | 4.26% |
| Japonica Intermediate | 68 | 83.82% | 16.18% |
| Group VI/Aromatic | 12 | 91.67% | 8.33% |
| Intermediate | 42 | 85.71% | 14.29% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0431376420 | A->T | INTERGENIC | None |