Detailed information of SNP:
|
SNP ID:
sf0431376592(Gbrowse)
Chromosome: chr04 Position: 31376592 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1415 | 94.20% | 5.80% |
| All Indica | 798 | 91.35% | 8.65% |
| All Japonica | 494 | 98.58% | 1.42% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 375 | 94.93% | 5.07% |
| Indica II | 213 | 87.79% | 12.21% |
| Indica Intermediate | 210 | 88.57% | 11.43% |
| Temperate Japonica | 335 | 97.91% | 2.09% |
| Tropical Japonica | 92 | 100.00% | 0.00% |
| Japonica Intermediate | 67 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 90.48% | 9.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0431376592 | A->G | INTERGENIC | None |