Detailed information of SNP:
|
SNP ID:
sf0431381880(Gbrowse)
Chromosome: chr04 Position: 31381880 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1400 | 95.64% | 4.36% |
| All Indica | 789 | 92.27% | 7.73% |
| All Japonica | 490 | 100.00% | 0.00% |
| Aus | 65 | 100.00% | 0.00% |
| Indica I | 371 | 100.00% | 0.00% |
| Indica II | 209 | 75.12% | 24.88% |
| Indica Intermediate | 209 | 95.69% | 4.31% |
| Temperate Japonica | 330 | 100.00% | 0.00% |
| Tropical Japonica | 92 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0431381880 | C->A | INTERGENIC | None |