Detailed information of SNP:
|
SNP ID:
sf0431398253(Gbrowse)
Chromosome: chr04 Position: 31398253 |
Major allele:
A
Minor allele: C Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1418 | 87.87% | 12.13% |
| All Indica | 799 | 94.49% | 5.51% |
| All Japonica | 497 | 81.29% | 18.71% |
| Aus | 67 | 64.18% | 35.82% |
| Indica I | 375 | 97.60% | 2.40% |
| Indica II | 213 | 93.43% | 6.57% |
| Indica Intermediate | 211 | 90.05% | 9.95% |
| Temperate Japonica | 335 | 89.55% | 10.45% |
| Tropical Japonica | 94 | 45.74% | 54.26% |
| Japonica Intermediate | 68 | 89.71% | 10.29% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 41 | 80.49% | 19.51% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0431398253 | A->C | LOC_Os04g53030(LOC_Os04g53030.1) | INTRON |