Detailed information of SNP:
|
SNP ID:
sf0431411984(Gbrowse)
Chromosome: chr04 Position: 31411984 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1398 | 94.35% | 5.65% |
| All Indica | 778 | 91.13% | 8.87% |
| All Japonica | 497 | 98.59% | 1.41% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 371 | 91.37% | 8.63% |
| Indica II | 208 | 98.08% | 1.92% |
| Indica Intermediate | 199 | 83.42% | 16.58% |
| Temperate Japonica | 335 | 98.21% | 1.79% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0431411984 | C->T | LOC_Os04g53040(LOC_Os04g53040.1) | INTRON |