Detailed information of SNP:
|
SNP ID:
sf0431414186(Gbrowse)
Chromosome: chr04 Position: 31414186 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1417 | 62.39% | 37.61% |
| All Indica | 798 | 71.93% | 28.07% |
| All Japonica | 496 | 41.33% | 58.67% |
| Aus | 67 | 94.03% | 5.97% |
| Indica I | 375 | 74.13% | 25.87% |
| Indica II | 212 | 63.68% | 36.32% |
| Indica Intermediate | 211 | 76.30% | 23.70% |
| Temperate Japonica | 334 | 23.35% | 76.65% |
| Tropical Japonica | 94 | 82.98% | 17.02% |
| Japonica Intermediate | 68 | 72.06% | 27.94% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 66.67% | 33.33% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0431414186 | A->G | INTERGENIC | None |