Detailed information of SNP:
|
SNP ID:
sf0431414234(Gbrowse)
Chromosome: chr04 Position: 31414234 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1417 | 56.32% | 43.68% |
| All Indica | 797 | 37.39% | 62.61% |
| All Japonica | 497 | 89.74% | 10.26% |
| Aus | 67 | 47.76% | 52.24% |
| Indica I | 375 | 29.60% | 70.40% |
| Indica II | 213 | 49.30% | 50.70% |
| Indica Intermediate | 209 | 39.23% | 60.77% |
| Temperate Japonica | 335 | 97.61% | 2.39% |
| Tropical Japonica | 94 | 62.77% | 37.23% |
| Japonica Intermediate | 68 | 88.24% | 11.76% |
| Group VI/Aromatic | 14 | 42.86% | 57.14% |
| Intermediate | 42 | 38.10% | 61.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0431414234 | C->T | INTERGENIC | None |