Detailed information of SNP:
|
SNP ID:
sf0431416831(Gbrowse)
Chromosome: chr04 Position: 31416831 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1417 | 74.59% | 25.41% |
| All Indica | 799 | 92.99% | 7.01% |
| All Japonica | 496 | 41.33% | 58.67% |
| Aus | 67 | 95.52% | 4.48% |
| Indica I | 375 | 87.20% | 12.80% |
| Indica II | 213 | 96.71% | 3.29% |
| Indica Intermediate | 211 | 99.53% | 0.47% |
| Temperate Japonica | 335 | 23.28% | 76.72% |
| Tropical Japonica | 94 | 84.04% | 15.96% |
| Japonica Intermediate | 67 | 71.64% | 28.36% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 75.61% | 24.39% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0431416831 | A->G | LOC_Os04g53050(LOC_Os04g53050.1) | Synonymous |