Detailed information of SNP:
|
SNP ID:
sf0431426448(Gbrowse)
Chromosome: chr04 Position: 31426448 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1417 | 68.03% | 31.97% |
| All Indica | 799 | 82.85% | 17.15% |
| All Japonica | 495 | 39.19% | 60.81% |
| Aus | 67 | 94.03% | 5.97% |
| Indica I | 375 | 84.53% | 15.47% |
| Indica II | 213 | 75.12% | 24.88% |
| Indica Intermediate | 211 | 87.68% | 12.32% |
| Temperate Japonica | 334 | 22.16% | 77.84% |
| Tropical Japonica | 94 | 82.98% | 17.02% |
| Japonica Intermediate | 67 | 62.69% | 37.31% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 73.81% | 26.19% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0431426448 | T->C | INTERGENIC | None |