Detailed information of SNP:
|
SNP ID:
sf0431427366(Gbrowse)
Chromosome: chr04 Position: 31427366 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1417 | 74.31% | 25.69% |
| All Indica | 798 | 91.35% | 8.65% |
| All Japonica | 496 | 43.35% | 56.65% |
| Aus | 67 | 94.03% | 5.97% |
| Indica I | 375 | 85.87% | 14.13% |
| Indica II | 212 | 93.40% | 6.60% |
| Indica Intermediate | 211 | 99.05% | 0.95% |
| Temperate Japonica | 335 | 24.48% | 75.52% |
| Tropical Japonica | 94 | 85.11% | 14.89% |
| Japonica Intermediate | 67 | 79.10% | 20.90% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 76.19% | 23.81% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0431427366 | T->C | INTERGENIC | None |