Detailed information of SNP:
|
SNP ID:
sf0431428481(Gbrowse)
Chromosome: chr04 Position: 31428481 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1418 | 94.36% | 5.64% |
| All Indica | 798 | 96.87% | 3.13% |
| All Japonica | 497 | 92.35% | 7.65% |
| Aus | 67 | 82.09% | 17.91% |
| Indica I | 375 | 95.73% | 4.27% |
| Indica II | 213 | 98.12% | 1.88% |
| Indica Intermediate | 210 | 97.62% | 2.38% |
| Temperate Japonica | 335 | 95.82% | 4.18% |
| Tropical Japonica | 94 | 77.66% | 22.34% |
| Japonica Intermediate | 68 | 95.59% | 4.41% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0431428481 | C->T | LOC_Os04g53080(LOC_Os04g53080.1) | Synonymous |