Detailed information of SNP:
|
SNP ID:
sf0431429432(Gbrowse)
Chromosome: chr04 Position: 31429432 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1418 | 63.40% | 36.60% |
| All Indica | 799 | 81.35% | 18.65% |
| All Japonica | 496 | 30.44% | 69.56% |
| Aus | 67 | 83.58% | 16.42% |
| Indica I | 375 | 84.00% | 16.00% |
| Indica II | 213 | 75.12% | 24.88% |
| Indica Intermediate | 211 | 82.94% | 17.06% |
| Temperate Japonica | 334 | 14.07% | 85.93% |
| Tropical Japonica | 94 | 81.91% | 18.09% |
| Japonica Intermediate | 68 | 39.71% | 60.29% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 66.67% | 33.33% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0431429432 | G->A | INTERGENIC | None |