Detailed information of SNP:
|
SNP ID:
sf0431429856(Gbrowse)
Chromosome: chr04 Position: 31429856 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1419 | 73.22% | 26.78% |
| All Indica | 799 | 85.23% | 14.77% |
| All Japonica | 497 | 50.10% | 49.90% |
| Aus | 67 | 89.55% | 10.45% |
| Indica I | 375 | 88.27% | 11.73% |
| Indica II | 213 | 77.00% | 23.00% |
| Indica Intermediate | 211 | 88.15% | 11.85% |
| Temperate Japonica | 335 | 32.24% | 67.76% |
| Tropical Japonica | 94 | 93.62% | 6.38% |
| Japonica Intermediate | 68 | 77.94% | 22.06% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 83.33% | 16.67% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0431429856 | T->C | INTERGENIC | None |