Detailed information of SNP:
|
SNP ID:
sf0431430698(Gbrowse)
Chromosome: chr04 Position: 31430698 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1211 | 60.69% | 39.31% |
| All Indica | 619 | 49.92% | 50.08% |
| All Japonica | 480 | 77.92% | 22.08% |
| Aus | 63 | 49.21% | 50.79% |
| Indica I | 251 | 48.61% | 51.39% |
| Indica II | 194 | 52.58% | 47.42% |
| Indica Intermediate | 174 | 48.85% | 51.15% |
| Temperate Japonica | 332 | 90.06% | 9.94% |
| Tropical Japonica | 82 | 39.02% | 60.98% |
| Japonica Intermediate | 66 | 65.15% | 34.85% |
| Group VI/Aromatic | 13 | 0.00% | 100.00% |
| Intermediate | 36 | 58.33% | 41.67% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0431430698 | C->T | INTERGENIC | None |