Detailed information of SNP:
|
SNP ID:
sf0431430844(Gbrowse)
Chromosome: chr04 Position: 31430844 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1354 | 58.12% | 41.88% |
| All Indica | 772 | 74.48% | 25.52% |
| All Japonica | 471 | 29.72% | 70.28% |
| Aus | 58 | 56.90% | 43.10% |
| Indica I | 368 | 75.82% | 24.18% |
| Indica II | 207 | 68.60% | 31.40% |
| Indica Intermediate | 197 | 78.17% | 21.83% |
| Temperate Japonica | 322 | 14.60% | 85.40% |
| Tropical Japonica | 82 | 68.29% | 31.71% |
| Japonica Intermediate | 67 | 55.22% | 44.78% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 39 | 66.67% | 33.33% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0431430844 | T->C | INTERGENIC | None |