Detailed information of SNP:
|
SNP ID:
sf0431433989(Gbrowse)
Chromosome: chr04 Position: 31433989 |
Major allele:
G
Minor allele: T Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1346 | 77.04% | 22.96% |
| All Indica | 732 | 66.94% | 33.06% |
| All Japonica | 497 | 91.15% | 8.85% |
| Aus | 62 | 91.94% | 8.06% |
| Indica I | 350 | 67.14% | 32.86% |
| Indica II | 186 | 60.75% | 39.25% |
| Indica Intermediate | 196 | 72.45% | 27.55% |
| Temperate Japonica | 335 | 98.81% | 1.19% |
| Tropical Japonica | 94 | 62.77% | 37.23% |
| Japonica Intermediate | 68 | 92.65% | 7.35% |
| Group VI/Aromatic | 14 | 50.00% | 50.00% |
| Intermediate | 41 | 73.17% | 26.83% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0431433989 | G->T | LOC_Os04g53090(LOC_Os04g53090.1) | INTRON |