Detailed information of SNP:
|
SNP ID:
sf0431448516(Gbrowse)
Chromosome: chr04 Position: 31448516 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1401 | 97.00% | 3.00% |
| All Indica | 797 | 98.37% | 1.63% |
| All Japonica | 484 | 94.01% | 5.99% |
| Aus | 65 | 100.00% | 0.00% |
| Indica I | 373 | 96.51% | 3.49% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 329 | 93.01% | 6.99% |
| Tropical Japonica | 93 | 97.85% | 2.15% |
| Japonica Intermediate | 62 | 93.55% | 6.45% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0431448516 | A->G | INTERGENIC | None |