Detailed information of SNP:
|
SNP ID:
sf0431449073(Gbrowse)
Chromosome: chr04 Position: 31449073 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1398 | 88.63% | 11.37% |
| All Indica | 780 | 82.82% | 17.18% |
| All Japonica | 495 | 97.37% | 2.63% |
| Aus | 67 | 85.07% | 14.93% |
| Indica I | 368 | 88.04% | 11.96% |
| Indica II | 210 | 82.38% | 17.62% |
| Indica Intermediate | 202 | 73.76% | 26.24% |
| Temperate Japonica | 334 | 96.71% | 3.29% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 67 | 98.51% | 1.49% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0431449073 | T->C | INTERGENIC | None |