Detailed information of SNP:
|
SNP ID:
sf0431456473(Gbrowse)
Chromosome: chr04 Position: 31456473 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1408 | 91.05% | 8.95% |
| All Indica | 789 | 99.24% | 0.76% |
| All Japonica | 497 | 83.50% | 16.50% |
| Aus | 67 | 62.69% | 37.31% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 205 | 99.02% | 0.98% |
| Indica Intermediate | 209 | 98.56% | 1.44% |
| Temperate Japonica | 335 | 88.96% | 11.04% |
| Tropical Japonica | 94 | 90.43% | 9.57% |
| Japonica Intermediate | 68 | 47.06% | 52.94% |
| Group VI/Aromatic | 14 | 28.57% | 71.43% |
| Intermediate | 41 | 92.68% | 7.32% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0431456473 | G->A | LOC_Os04g53120(LOC_Os04g53120.1) | Synonymous |