Detailed information of SNP:
|
SNP ID:
sf0431462630(Gbrowse)
Chromosome: chr04 Position: 31462630 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1406 | 81.29% | 18.71% |
| All Indica | 793 | 94.20% | 5.80% |
| All Japonica | 491 | 59.27% | 40.73% |
| Aus | 66 | 90.91% | 9.09% |
| Indica I | 373 | 92.23% | 7.77% |
| Indica II | 211 | 95.73% | 4.27% |
| Indica Intermediate | 209 | 96.17% | 3.83% |
| Temperate Japonica | 329 | 46.50% | 53.50% |
| Tropical Japonica | 94 | 86.17% | 13.83% |
| Japonica Intermediate | 68 | 83.82% | 16.18% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 76.19% | 23.81% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0431462630 | A->G | LOC_Os04g53130(LOC_Os04g53130.1) | INTRON |