Detailed information of SNP:
|
SNP ID:
sf0431482547(Gbrowse)
Chromosome: chr04 Position: 31482547 |
Major allele:
T
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1415 | 68.69% | 31.31% |
| All Indica | 796 | 82.91% | 17.09% |
| All Japonica | 496 | 41.33% | 58.67% |
| Aus | 67 | 94.03% | 5.97% |
| Indica I | 373 | 84.18% | 15.82% |
| Indica II | 213 | 75.12% | 24.88% |
| Indica Intermediate | 210 | 88.57% | 11.43% |
| Temperate Japonica | 334 | 22.16% | 77.84% |
| Tropical Japonica | 94 | 85.11% | 14.89% |
| Japonica Intermediate | 68 | 75.00% | 25.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 73.81% | 26.19% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0431482547 | A->T | INTERGENIC | None |