Detailed information of SNP:
|
SNP ID:
sf0431490704(Gbrowse)
Chromosome: chr04 Position: 31490704 |
Major allele:
T
Minor allele: G Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1419 | 80.34% | 19.66% |
| All Indica | 799 | 86.86% | 13.14% |
| All Japonica | 497 | 73.04% | 26.96% |
| Aus | 67 | 61.19% | 38.81% |
| Indica I | 375 | 90.67% | 9.33% |
| Indica II | 213 | 78.87% | 21.13% |
| Indica Intermediate | 211 | 88.15% | 11.85% |
| Temperate Japonica | 335 | 75.22% | 24.78% |
| Tropical Japonica | 94 | 90.43% | 9.57% |
| Japonica Intermediate | 68 | 38.24% | 61.76% |
| Group VI/Aromatic | 14 | 28.57% | 71.43% |
| Intermediate | 42 | 90.48% | 9.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0431490704 | T->G | INTERGENIC | None |