Detailed information of SNP:
|
SNP ID:
sf0431492046(Gbrowse)
Chromosome: chr04 Position: 31492046 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1399 | 95.43% | 4.57% |
| All Indica | 796 | 97.36% | 2.64% |
| All Japonica | 480 | 91.25% | 8.75% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 372 | 94.62% | 5.38% |
| Indica II | 213 | 99.53% | 0.47% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 321 | 87.85% | 12.15% |
| Tropical Japonica | 92 | 100.00% | 0.00% |
| Japonica Intermediate | 67 | 95.52% | 4.48% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0431492046 | A->G | INTERGENIC | None |