Detailed information of SNP:
|
SNP ID:
sf0431494977(Gbrowse)
Chromosome: chr04 Position: 31494977 |
Major allele:
A
Minor allele: T Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1310 | 87.40% | 12.60% |
| All Indica | 696 | 94.11% | 5.89% |
| All Japonica | 496 | 83.27% | 16.73% |
| Aus | 63 | 53.97% | 46.03% |
| Indica I | 287 | 95.47% | 4.53% |
| Indica II | 211 | 98.10% | 1.90% |
| Indica Intermediate | 198 | 87.88% | 12.12% |
| Temperate Japonica | 335 | 88.66% | 11.34% |
| Tropical Japonica | 94 | 91.49% | 8.51% |
| Japonica Intermediate | 67 | 44.78% | 55.22% |
| Group VI/Aromatic | 14 | 28.57% | 71.43% |
| Intermediate | 41 | 95.12% | 4.88% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0431494977 | A->T | LOC_Os04g53200(LOC_Os04g53200.1) | INTRON |