Detailed information of SNP:
|
SNP ID:
sf0431499438(Gbrowse)
Chromosome: chr04 Position: 31499438 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1414 | 77.23% | 22.77% |
| All Indica | 797 | 94.98% | 5.02% |
| All Japonica | 495 | 50.51% | 49.49% |
| Aus | 66 | 69.70% | 30.30% |
| Indica I | 374 | 92.25% | 7.75% |
| Indica II | 213 | 96.71% | 3.29% |
| Indica Intermediate | 210 | 98.10% | 1.90% |
| Temperate Japonica | 334 | 34.13% | 65.87% |
| Tropical Japonica | 94 | 85.11% | 14.89% |
| Japonica Intermediate | 67 | 83.58% | 16.42% |
| Group VI/Aromatic | 14 | 71.43% | 28.57% |
| Intermediate | 42 | 69.05% | 30.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0431499438 | A->G | INTERGENIC | None |