Detailed information of SNP:



SNP ID: sf0431499438(Gbrowse)

Chromosome: chr04

Position: 31499438
Major allele: G

Minor allele: A

Reference allele: A

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of G(major allele)Frequency of A(minor allele)
All1414 77.23% 22.77%
All Indica797 94.98% 5.02%
All Japonica495 50.51% 49.49%
Aus66 69.70% 30.30%
Indica I374 92.25% 7.75%
Indica II213 96.71% 3.29%
Indica Intermediate210 98.10% 1.90%
Temperate Japonica334 34.13% 65.87%
Tropical Japonica94 85.11% 14.89%
Japonica Intermediate67 83.58% 16.42%
Group VI/Aromatic14 71.43% 28.57%
Intermediate42 69.05% 30.95%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf0431499438 A->G INTERGENIC None