Detailed information of SNP:
|
SNP ID:
sf0431515763(Gbrowse)
Chromosome: chr04 Position: 31515763 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1411 | 69.95% | 30.05% |
| All Indica | 794 | 68.39% | 31.61% |
| All Japonica | 494 | 75.51% | 24.49% |
| Aus | 67 | 58.21% | 41.79% |
| Indica I | 374 | 64.71% | 35.29% |
| Indica II | 212 | 74.53% | 25.47% |
| Indica Intermediate | 208 | 68.75% | 31.25% |
| Temperate Japonica | 332 | 87.35% | 12.65% |
| Tropical Japonica | 94 | 61.70% | 38.30% |
| Japonica Intermediate | 68 | 36.76% | 63.24% |
| Group VI/Aromatic | 14 | 28.57% | 71.43% |
| Intermediate | 42 | 66.67% | 33.33% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0431515763 | T->C | INTERGENIC | None |