Detailed information of SNP:
|
SNP ID:
sf0431534350(Gbrowse)
Chromosome: chr04 Position: 31534350 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1414 | 52.90% | 47.10% |
| All Indica | 798 | 36.22% | 63.78% |
| All Japonica | 494 | 80.97% | 19.03% |
| Aus | 67 | 44.78% | 55.22% |
| Indica I | 375 | 52.27% | 47.73% |
| Indica II | 212 | 15.09% | 84.91% |
| Indica Intermediate | 211 | 28.91% | 71.09% |
| Temperate Japonica | 333 | 91.89% | 8.11% |
| Tropical Japonica | 93 | 36.56% | 63.44% |
| Japonica Intermediate | 68 | 88.24% | 11.76% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 36.59% | 63.41% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0431534350 | T->C | INTERGENIC | None |