Detailed information of SNP:
|
SNP ID:
sf0431537745(Gbrowse)
Chromosome: chr04 Position: 31537745 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1417 | 65.21% | 34.79% |
| All Indica | 798 | 88.10% | 11.90% |
| All Japonica | 496 | 30.65% | 69.35% |
| Aus | 67 | 56.72% | 43.28% |
| Indica I | 374 | 86.90% | 13.10% |
| Indica II | 213 | 93.43% | 6.57% |
| Indica Intermediate | 211 | 84.83% | 15.17% |
| Temperate Japonica | 334 | 22.46% | 77.54% |
| Tropical Japonica | 94 | 65.96% | 34.04% |
| Japonica Intermediate | 68 | 22.06% | 77.94% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 73.81% | 26.19% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0431537745 | T->C | LOC_Os04g53250(LOC_Os04g53250.1) | Non-Synonymous SNP |