Detailed information of SNP:
|
SNP ID:
sf0431546639(Gbrowse)
Chromosome: chr04 Position: 31546639 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1354 | 95.57% | 4.43% |
| All Indica | 755 | 96.16% | 3.84% |
| All Japonica | 486 | 95.47% | 4.53% |
| Aus | 61 | 98.36% | 1.64% |
| Indica I | 358 | 99.72% | 0.28% |
| Indica II | 201 | 91.54% | 8.46% |
| Indica Intermediate | 196 | 94.39% | 5.61% |
| Temperate Japonica | 328 | 95.12% | 4.88% |
| Tropical Japonica | 92 | 98.91% | 1.09% |
| Japonica Intermediate | 66 | 92.42% | 7.58% |
| Group VI/Aromatic | 13 | 69.23% | 30.77% |
| Intermediate | 39 | 89.74% | 10.26% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0431546639 | A->G | LOC_Os04g53270(LOC_Os04g53270.1) | Non-Synonymous SNP |