Detailed information of SNP:
|
SNP ID:
sf0431559583(Gbrowse)
Chromosome: chr04 Position: 31559583 |
Major allele:
G
Minor allele: T Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1393 | 81.12% | 18.88% |
| All Indica | 795 | 77.23% | 22.77% |
| All Japonica | 491 | 89.82% | 10.18% |
| Aus | 54 | 64.81% | 35.19% |
| Indica I | 374 | 88.24% | 11.76% |
| Indica II | 213 | 63.85% | 36.15% |
| Indica Intermediate | 208 | 71.15% | 28.85% |
| Temperate Japonica | 331 | 95.77% | 4.23% |
| Tropical Japonica | 93 | 63.44% | 36.56% |
| Japonica Intermediate | 67 | 97.01% | 2.99% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 39 | 66.67% | 33.33% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0431559583 | G->T | INTERGENIC | None |