Detailed information of SNP:
|
SNP ID:
sf0431564982(Gbrowse)
Chromosome: chr04 Position: 31564982 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1411 | 92.35% | 7.65% |
| All Indica | 791 | 87.61% | 12.39% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 67 | 91.04% | 8.96% |
| Indica I | 375 | 91.73% | 8.27% |
| Indica II | 213 | 82.16% | 17.84% |
| Indica Intermediate | 203 | 85.71% | 14.29% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 90.48% | 9.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0431564982 | C->A | LOC_Os04g53300(LOC_Os04g53300.1) | INTRON |