Detailed information of SNP:
|
SNP ID:
sf0431564990(Gbrowse)
Chromosome: chr04 Position: 31564990 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1392 | 91.24% | 8.76% |
| All Indica | 777 | 85.71% | 14.29% |
| All Japonica | 492 | 99.80% | 0.20% |
| Aus | 67 | 91.04% | 8.96% |
| Indica I | 371 | 90.57% | 9.43% |
| Indica II | 213 | 82.63% | 17.37% |
| Indica Intermediate | 193 | 79.79% | 20.21% |
| Temperate Japonica | 330 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 90.48% | 9.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0431564990 | A->G | LOC_Os04g53300(LOC_Os04g53300.1) | INTRON |