Detailed information of SNP:
|
SNP ID:
sf0431590525(Gbrowse)
Chromosome: chr04 Position: 31590525 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1177 | 56.75% | 43.25% |
| All Indica | 733 | 82.67% | 17.33% |
| All Japonica | 349 | 4.30% | 95.70% |
| Aus | 54 | 38.89% | 61.11% |
| Indica I | 359 | 82.73% | 17.27% |
| Indica II | 189 | 87.83% | 12.17% |
| Indica Intermediate | 185 | 77.30% | 22.70% |
| Temperate Japonica | 284 | 1.41% | 98.59% |
| Tropical Japonica | 35 | 20.00% | 80.00% |
| Japonica Intermediate | 30 | 13.33% | 86.67% |
| Group VI/Aromatic | 2 | 100.00% | 0.00% |
| Intermediate | 39 | 61.54% | 38.46% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0431590525 | A->G | INTERGENIC | None |