Detailed information of SNP:
|
SNP ID:
sf0431592816(Gbrowse)
Chromosome: chr04 Position: 31592816 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1412 | 72.10% | 27.90% |
| All Indica | 797 | 89.59% | 10.41% |
| All Japonica | 493 | 38.95% | 61.05% |
| Aus | 66 | 98.48% | 1.52% |
| Indica I | 373 | 84.45% | 15.55% |
| Indica II | 213 | 98.12% | 1.88% |
| Indica Intermediate | 211 | 90.05% | 9.95% |
| Temperate Japonica | 331 | 18.13% | 81.87% |
| Tropical Japonica | 94 | 87.23% | 12.77% |
| Japonica Intermediate | 68 | 73.53% | 26.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 78.57% | 21.43% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0431592816 | A->G | LOC_Os04g53360(LOC_Os04g53360.1) | Synonymous |