Detailed information of SNP:
|
SNP ID:
sf0431597450(Gbrowse)
Chromosome: chr04 Position: 31597450 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1413 | 77.85% | 22.15% |
| All Indica | 795 | 81.26% | 18.74% |
| All Japonica | 497 | 77.87% | 22.13% |
| Aus | 66 | 51.52% | 48.48% |
| Indica I | 373 | 85.79% | 14.21% |
| Indica II | 212 | 78.77% | 21.23% |
| Indica Intermediate | 210 | 75.71% | 24.29% |
| Temperate Japonica | 335 | 87.16% | 12.84% |
| Tropical Japonica | 94 | 71.28% | 28.72% |
| Japonica Intermediate | 68 | 41.18% | 58.82% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 41 | 80.49% | 19.51% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0431597450 | C->T | INTERGENIC | None |