Detailed information of SNP:
|
SNP ID:
sf0431598357(Gbrowse)
Chromosome: chr04 Position: 31598357 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1415 | 95.76% | 4.24% |
| All Indica | 798 | 99.00% | 1.00% |
| All Japonica | 494 | 92.31% | 7.69% |
| Aus | 67 | 85.07% | 14.93% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 212 | 98.58% | 1.42% |
| Indica Intermediate | 211 | 97.63% | 2.37% |
| Temperate Japonica | 335 | 97.31% | 2.69% |
| Tropical Japonica | 91 | 71.43% | 28.57% |
| Japonica Intermediate | 68 | 95.59% | 4.41% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 90.48% | 9.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0431598357 | T->C | INTERGENIC | None |