Detailed information of SNP:
|
SNP ID:
sf0431617908(Gbrowse)
Chromosome: chr04 Position: 31617908 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1416 | 78.32% | 21.68% |
| All Indica | 797 | 71.14% | 28.86% |
| All Japonica | 496 | 92.14% | 7.86% |
| Aus | 67 | 70.15% | 29.85% |
| Indica I | 375 | 82.40% | 17.60% |
| Indica II | 212 | 58.96% | 41.04% |
| Indica Intermediate | 210 | 63.33% | 36.67% |
| Temperate Japonica | 334 | 91.02% | 8.98% |
| Tropical Japonica | 94 | 93.62% | 6.38% |
| Japonica Intermediate | 68 | 95.59% | 4.41% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 59.52% | 40.48% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0431617908 | G->A | LOC_Os04g53390(LOC_Os04g53390.1) | Non-Synonymous SNP |