Detailed information of SNP:
|
SNP ID:
sf0431621269(Gbrowse)
Chromosome: chr04 Position: 31621269 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1411 | 57.76% | 42.24% |
| All Indica | 793 | 30.90% | 69.10% |
| All Japonica | 497 | 95.37% | 4.63% |
| Aus | 65 | 87.69% | 12.31% |
| Indica I | 374 | 21.12% | 78.88% |
| Indica II | 211 | 40.76% | 59.24% |
| Indica Intermediate | 208 | 38.46% | 61.54% |
| Temperate Japonica | 335 | 95.52% | 4.48% |
| Tropical Japonica | 94 | 92.55% | 7.45% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 59.52% | 40.48% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0431621269 | A->G | INTERGENIC | None |